plusMinusIndSwap: Duplicates 'plusMinus' but using the independent swap...
In ajrominger/RarePlusComMinus: A package in support of the manuscript ""

Description Usage Arguments Details Value Author(s)

View source: R/plusMinusIndSwap.R

Duplicates plusMinus but using the independent swap algorithm from {picante}

1	plusMinusIndSwap(x, alpha = 0.05, B = 999)

`x`	site by species matrix (sites as rows, species as columns, abundances in cells)
`alpha`	the significance level
`B`	number of replicates for the null model permutations

All details are the same as plusMinus but this function uses the independent swap algorithm from {picante} instead of the fixed-fixed null algorithm. This function is only really intended to be used with indSwapTest.

an ncol(x) by ncol(x) matrix of species-species similarities

Andy Rominger <ajrominger@gmail.com>

ajrominger/RarePlusComMinus documentation built on June 27, 2021, 9:25 p.m.