calc.fd: Calculate model functional diversity

In akeyel/spatialdemography: A Spatially Explicit Metacommunity Model

Description

This function calculates functional diversity at the end of the model simulation and updates the Results dataframe.

Usage

calc.fd(Results, SpTraits, abund.mat, spe, resolution, log.trans, sv, num.tp)

Arguments

Results	The results file to be updated
SpTraits	A dataframe containing the Species Trait values
abund.mat	A matrix giving abundances for each species and cell
spe	The total number of species in the regional species pool
resolution	The number of decimal places to round functional traits
log.trans	Whether or not to log-transform functional traits (this may be broken)
sv	An indicator parameter
num.tp	An indicator to assist in updating the correct row of the Results

Note

The intention is to add an option to allow this to be calculated at intermediate model steps

akeyel/spatialdemography documentation built on May 12, 2019, 4:43 a.m.