compute.diagnostics: Compute Diagnostics

In akeyel/spatialdemography: A Spatially Explicit Metacommunity Model

Description

Function to compute basic matrix diagnostics

Usage

compute.diagnostics(spe, B1.lst, B2.lst, M.lst, P, S, p, outpath.base, vdb.data,
  change.count, run.times, run.lbl, is.first = 0, Gave.Warn = 0)

Arguments

spe	The number of species in the species pool
B1.lst	A list of the first demography matrices for each species
B2.lst	A list of the second demography matrices for each species
M.lst	A list of the dispersal matrices for each species
P	The vec-permutation matrix
S	The number of stages in the matrix model
p	The number of cells in a square landscape
outpath.base	The base path for outputs
vdb.data	An indicator for whether or not to create visual debugger data
change.count	An indicator for the current environmental change step.
run.times	A list of intermediate times during the model run
run.lbl	A list of labels for each of the intermediate times
is.first	An indicator for whether this is the first time the code is run (for timing purposes)
Gave.Warn	An indicator for whether a warning message has already been given. If so, a duplicate warning will NOT be reissued.

Note

The diagnostics DO NOT include effects of the carrying capacity or microsite competition! WARNING This function requires exactly 4 stages, with the first stage as the mobile dispersal stage. is stage specific, and requires 4 stages with the first stage as mobile seeds!

akeyel/spatialdemography documentation built on May 12, 2019, 4:43 a.m.