calculate.traits: Calculate traits (stochastic plants)

In akeyel/spatialdemography: A Spatially Explicit Metacommunity Model

Description

Calculate traits based on logic in stochastic plants MS

Usage

calculate.traits(sp.vals, these.env.cond, sp.out.file, env.file,
  do.seed.clone.override, do.thinning.override)

Arguments

sp.vals	Input species parameters. See details at sp.vals
these.env.cond	Input environmental settings. See details at env.param.file
sp.out.file	Location for the output species file
env.file	Location for the output Environmental Layers file
do.seed.clone.override	An indicator variable to determine whether to override longevity/seed/clone trade-offs
do.thinning.override	An inidicator variable to determine whether to override default thinning behavior.

Value

No value is returned from the function, but a new species file is written and a new environmental layers file is written.

Note

Stochastic seed survival probably needs to be stochastic and change at each time step as well.

References

Gerstenlauer, J.L.K., A.C. Keyel, and K. Wiegand. (in prep.) Predicting natural selection for life-history traits using stochatic matrix population models. Target Journal: Journal of Ecology

akeyel/spatialdemography documentation built on May 12, 2019, 4:43 a.m.