read_composites: Read composite images

In akoyabio/phenoptr: inForm Helper Functions

Description

Read images based on inForm composite, including composite with phenotype overlay, and phenotype overlay alone.

Usage

read_composites(path)

Arguments

path	Path to the composite image file

Details

If the selected file is a JPEG file, the returned value will be a list containing a single image matrix and no attributes other than dim.

If the selected file is a TIFF file, the returned value will be a list possibly containing multiple image matrices with many metadata attributes. In addition to the TIFF metadata provided by tiff::readTIFF(), attributes may include

• composite_name - the user's name for this composite

• components - a named list, where names are component names and values are hex colors

• scheme_name - the user's name for the phenotype scheme

• phenotypes - a named list, where names are phenotype names and values are hex colors

Value

A list of image matrices, possibly containing image metadata in attributes (see Details).

akoyabio/phenoptr documentation built on Jan. 7, 2022, 5:37 p.m.