Test Georeferenced Data

Description Usage Arguments Details Value Note Author(s) References See Also

Get species distributed on a specific range of altitude.

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cutRange(data = NULL, path = NULL, rd.frmt = "readRDS", range.from = 0,
  range.to = 1000, wrt.frmt = "saveRDS", save.inside.in = NULL,
  save.outside.in = NULL)

`data`	Vector of characters. Name of the input file.
`path`	Vector of characters. Path to the input file.
`rd.frmt`	Vector of characters. File format to read. By default it will be read as a R object using the `'readRDS'` argument, but it can be read as plain text using the `'readTXT'` argument. See details.
`range.from`	Numeric vector. Lower bound of the range of the distribution
`range.to`	Numeric vector. Upper bound of the range of the distribution.
`wrt.frmt`	Vector of characters. Format to save output file. By default it will be written as a R object using the `'saveRDS'` argument, but it can be saved as plain text using the `'saveTXT'` argument. See details.
`save.inside.in`	Vector of characters. Path to the output file with the species whose occurrences are on the range assigned in `range.from` to `range.to` parameters. Output file will be called <inside.range>.
`save.outside.in`	Vector of characters. Path to the output file with the species whose occurences are not on the range assigned in `range.from` and `range.to` parameters. Output file will be called <outside.range>.

For more details about the formats to read and/or write, see readAndWrite function.

The headers of the input file must follow the Darwin Core standard [1]. The user can see the guide using data('ID_DarwinCore) command.

A table data.frame class with only the species whose occurences is on range assigned in range.from and range.to parameters, and a vector with a table with descriptive quantities.

See: R-Alarcon V. and Miranda-Esquivel DR.(submitted) geocleaMT: An R package to cleaning geographical data from electronic biodatabases.

R-Alarcon Viviana and Miranda-Esquivel Daniel R.

[1] Wieczorek, J. et al. 2012. Darwin core: An evolving community-developed biodiversity data standard. PloS One 7: e29715.

readAndWrite

alarconvv/geocleaMT documentation built on July 10, 2019, 12:50 a.m.