Man pages for alexandermxu/SPANTCR
Analyzes TCR Datasets
| AminoAcidFilter | Amino acid parameter matrix. |
| BLOSUMCappedDiff | Modified BLOSUM62 matrix. |
| CDR3Breakdown-class | Set CDR3Breakdown class |
| ComparisonFunction | Comparison function between two sets of TCRs generated by... |
| EntropyScan | Checks entropy contributions for each major motif in each... |
| FineBinTicks | Vector of tick centroids 1-100 to use with single CDR3 genes... |
| FineBinTicksPaired | Vector of tick centroids 1-200 to use with paired CDR3 for... |
| ScoreFunctionExponential5 | TCR score functions |
| ScoreFunctionSquared | TCR input score function |
| SearchIterator | Checks entropy contributions for all TCRs expressing a... |
| SPANTCR | Analyze a TCR Set |
| VDJDBCMVPairedInput | Sample data table of paired VDJDB CMV pp65 epitope data |
| WeightFunctionLinear | k-mer weight functions |
