EntropyScan: Checks entropy contributions for each major motif in each...

In alexandermxu/SPANTCR: Analyzes TCR Datasets

Description

Checks entropy contributions for each major motif in each range window

Usage

EntropyScan(Data, Searches, Limit = 0.03, ticksused = FineBinTicks)

Arguments

Data	CDR3Breakdown object
Searches	List of vectors containing search ranges, default SearchBoxes for single CDR3 SearchBoxesPaired for paired
Limit	Minimum frequency of k-mers to analyze in each bin, default 0.03
ticksused	Vector of ticks to analyze, FineBinTicks for single CDR3, FineBinTicksPaired for paired CDR3s

Value

List of repeated SearchIterator outputs for each search range (Searches), and summarized data by k-mers. Summarized data describes essential k-mers and their location.

Examples

## Not run: EntropyScan(CD3Breakdown, list(c(0.4,0.5), c(0.5,0.6)), 0.03, FineBinTicks)

alexandermxu/SPANTCR documentation built on Dec. 19, 2021, 12:30 a.m.