ComparisonFunction: Comparison function between two sets of TCRs generated by...

In alexandermxu/SPANTCR: Analyzes TCR Datasets

Description

Comparison function between two sets of TCRs generated by SPANTCR. Compatible between two paired sets, or two single gene sets.

Usage

ComparisonFunction(
  baseset,
  compset,
  limit = 100,
  ticks = FineBinTicks,
  functionmatrix = BLOSUMCappedDiff,
  fulloutput = F
)

Arguments

baseset	CDR3Breakdown object 1
compset	CDR3Breakdown object 2
limit	Cumulative distance at which to stop comparing CDR3s
ticks	Number of ticks to use, default 100
functionmatrix	Matrix of amino acid distance metrics, default modified BLOSUM
fulloutput	T/F if all TCRs in compset should be saved

Value

List containing the cumulative distance between each TCR of base set and either the top closest k-mers in compset or all k-mers

Examples

## Not run: ComparisonFunction(SPANTCROutput, SPANTCROutput, 100, FineBinTicks, BLOSUMCappedDiff, F)

alexandermxu/SPANTCR documentation built on Dec. 19, 2021, 12:30 a.m.