SearchIterator: Checks entropy contributions for all TCRs expressing a...
In alexandermxu/SPANTCR: Analyzes TCR Datasets
Description
Usage
Arguments
Value
Examples
View source: R/EntropyAnalysisFunctions.R
Description
Checks entropy contributions for all TCRs expressing a specific motif (searchterms) in a specific range (targetrange)
Usage
1
SearchIterator(base, searchterms, targetrange, ticks = FineBinTicks)
Arguments
base
CDR3Breakdown object
searchterms
Vector of k-mers to analyze matching the length analyzed in base
targetrange
Two element vector describing the lower and upper bound of CDR3 region analyzed (from 0-1)
ticks
Vector of ticks to analyze, FineBinTicks for single CDR3, FineBinTicksPaired for paired CDR3s
Value
data.table object describing per-bin entropy of k-mers containing a specific k-mer (searchterms) within a specific region (targetrange)
Examples
1
## Not run: SearchIterator(CDR3Breakdown, c("GG","GA"), c(0.4,0.6), FineBinTicks)
alexandermxu/SPANTCR documentation built on Dec. 19, 2021, 12:30 a.m.
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Description Usage Arguments Value Examples
View source: R/EntropyAnalysisFunctions.R
Description
Checks entropy contributions for all TCRs expressing a specific motif (searchterms) in a specific range (targetrange)
Usage
1 | SearchIterator(base, searchterms, targetrange, ticks = FineBinTicks)
|
Arguments
base |
CDR3Breakdown object |
searchterms |
Vector of k-mers to analyze matching the length analyzed in base |
targetrange |
Two element vector describing the lower and upper bound of CDR3 region analyzed (from 0-1) |
ticks |
Vector of ticks to analyze, FineBinTicks for single CDR3, FineBinTicksPaired for paired CDR3s |
Value
data.table object describing per-bin entropy of k-mers containing a specific k-mer (searchterms) within a specific region (targetrange)
Examples
1 | ## Not run: SearchIterator(CDR3Breakdown, c("GG","GA"), c(0.4,0.6), FineBinTicks)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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