PhenoEnrichCompare: PhenoEnrichCompare

In alexcis95/PhenoExam: Compare the likeness of phenotypes terms between groups of genes

PhenoEnrichCompare

Description

This function is used for RandomComparePheno.

Usage

PhenoEnrichCompare(
  geneset,
  genesetcompare,
  database = "HPO",
  organism = "human",
  plotn = 30,
  plotnumber = 1:plotn,
  url = F
)

Arguments

database	A string parameter with different options. You can define a vector with the databases.
organism	A string parameter: "human" if you have human genes and "mouse" if you have mouse genes
plotn	An integer with the number of term that you want in the plot. The default value is 30.
url	A logical parameter. T if you want interactive links
genes	A vector with human gene symbol.

Details

This function has developed by Alejandro Cisterna García as part of his PhD mentored by Juan Antonio Botía Blaya

alexcis95/PhenoExam documentation built on Jan. 6, 2023, 1:34 p.m.