PhenoEnrichGenespransimu: PhenoEnrichGenespransimu

In alexcis95/PhenoExam: Compare the likeness of phenotypes terms between groups of genes

PhenoEnrichGenespransimu

Description

This function analyses the similarity of phenotypic terms between two groups of genes

Usage

PhenoEnrichGenespransimu(genes, database = "HPO", organism = "human")

Arguments

genes	A vector with gene symbol, fixed genes or panel genes.
database	A string parameter with different options: "ALL", "HUMANDB", "MOUSEDB", "HPO", "CRB" and "MGD"
organism	A string parameter: "human" if you have human genes and "mouse" if you have mouse genes
p.value	Cut of p value as they are relevant terms
nulltestnumber	A number of random genes subset.
seed	A seed.

Details

This function has developed by Alejandro Cisterna García as part of his PhD mentored by Juan Antonio Botía Blaya

alexcis95/PhenoExam documentation built on Jan. 6, 2023, 1:34 p.m.