PhenoEnrichGenes: PhenoEnrichGenes

In alexcis95/PhenoExam: Compare the likeness of phenotypes terms between groups of genes

PhenoEnrichGenes

Description

This function do a phenotype enrichment analysis and obtain a table and a graph

Usage

PhenoEnrichGenes(
  genes,
  database = "HPO",
  organism = "human",
  plotn = 30,
  url = F
)

Arguments

genes	A vector with human gene symbol.
database	A string parameter with different options. You can define a vector with the databases.
organism	A string parameter: "human" if you have human genes and "mouse" if you have mouse genes
plotn	An integer with the number of term that you want in the plot. The default value is 30.
url	A logical parameter. T if you want interactive links

Details

This function has developed by Alejandro Cisterna García as part of his PhD mentored by Juan Antonio Botía Blaya

alexcis95/PhenoExam documentation built on Jan. 6, 2023, 1:34 p.m.