API for alexjgriffith/homeRhelpeR
A set of functions to help with Homer 2

Global functions
IUPACtoBase Man page Source code
addMotifHeader Source code
addMotifHeader.homer Source code
as.list.homer Source code
bindMotifLists Source code
buildFM Source code
checkHomerContents Source code
clusterMotifs Source code
combineClusterdMotifs Source code
complement Man page Source code
consensus2pwm Source code Source code
consensusIUPAC Man page Source code
count Source code
count2freq Source code
countMotifs Source code
countMotifsOne Source code
counts2PWM Source code
evoDist Source code
findRank Source code
getCons.homer Source code
getKmers Source code
getName.homer Source code
getPwm.homer Source code
homer Source code
homer2matrix Source code
homerFind Source code
homerProbs Source code
homerStamp.default Source code
homerStamp.motifList Source code
homerWrapper Man page Source code
ispalandrome Man page Source code
logPvalueFH Source code
mergeBase Source code
mergeConsensus Source code
mergeMotifLists Source code
motifList2Homer Source code
motifString Man page Source code
motifs2Homer Source code
orient Source code
print.homer Source code
print.motifList Source code
pwm2consensus Man page Source code
read.homer Man page Source code
reverseIUPAC Man page Source code
saveMultiXLS Source code
saveXLS Source code
scoreMotifHomer Source code
splitBlist Source code
stampWrapper Source code
summary.motifList Source code
trimMotif Source code
write.motifList Source code
alexjgriffith/homeRhelpeR documentation built on June 3, 2017, 3:56 p.m.