complement: reverse compliment
In alexjgriffith/homeRhelpeR: A set of functions to help with Homer 2
Description
Usage
Arguments
Examples
Description
Takes a string which can include base nucleaotides (AGCT) and
brakets ("[","]") and returns the reverse compliment including brakets
Usage
1
complement(string)
Arguments
string
input base string, eg A[AG]CT
Examples
1
2
3
4
5
6
compliment("[ACT]TA")
# [1] "TA[AGT]"
compliment(IUPACtoBase("STA"))
# [1] "TA[CG]"
consensusIUPAC(compliment(IUPACtoBase("STA")))
# [1] "TAS"
alexjgriffith/homeRhelpeR documentation built on May 10, 2019, 8:53 a.m.
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Description Usage Arguments Examples
Description
Takes a string which can include base nucleaotides (AGCT) and brakets ("[","]") and returns the reverse compliment including brakets
Usage
1 | complement(string)
|
Arguments
string |
input base string, eg A[AG]CT |
Examples
1 2 3 4 5 6 | compliment("[ACT]TA")
# [1] "TA[AGT]"
compliment(IUPACtoBase("STA"))
# [1] "TA[CG]"
consensusIUPAC(compliment(IUPACtoBase("STA")))
# [1] "TAS"
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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