Description Usage Arguments Value
This is only a wrapper for the DENOVO functionality of homer2, homer must be installed on the system before this can be used.
1 2 | homerWrapper(sequences, foreground, background, homerLocation,
motifsFile = NULL, opts = "-S 25 -len 6")
|
sequences |
Biostring dnastring object |
foreground |
The foreground subset of sequences, list |
background |
The background subset of sequences, list |
homerLocation |
The locatoin of the homer executable on your system |
motifsFile |
The file to save the motifs in, if none then the motifs are note saved |
opts |
A string of additional parameters to be passed to homer |
a pwm of the motifs found.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.