alexjgriffith/mT1: Motifs in Tandem with One Another

Identifies the distance between DNA motifs in subsets of the genome. Builds the empirical PDF from individual motifs and treats the normalized convolution as the expected probabilities for the comparison of distance. Can be applied to ChIP-Seq peaks.

Getting started

Package details

AuthorAlexander Griffith [aut, cre],
Bioconductor views Annotation ChIPSeq
MaintainerAlexander Griffith <[email protected]>
LicenseGPL
Version0.99.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("alexjgriffith/mT1")
alexjgriffith/mT1 documentation built on Dec. 10, 2017, 8:29 p.m.