findLocs: Find Motif Locations
In alexjgriffith/mT1: Motifs in Tandem with One Another
Description
Usage
Arguments
Value
Description
Finds the position of motifs on each index of fasta. The results can
be used to build the emperical PDF of motif locations.
Usage
1
findLocs(fasta, mloc, cloc, n1, combine = "Merged")
Arguments
fasta
A DNAStringSet
mloc
fasta The indicies that have motifs
cloc
fasta The indicies that have compliment motifs
n1
The motif name, an Atomic Character of only IUPAC characters
combine
If two motifs are found on the same index Merged|First
Value
Two columns , the first being the instance the second being the
distance
alexjgriffith/mT1 documentation built on May 10, 2019, 8:53 a.m.
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Description Usage Arguments Value
Description
Finds the position of motifs on each index of fasta. The results can be used to build the emperical PDF of motif locations.
Usage
1 | findLocs(fasta, mloc, cloc, n1, combine = "Merged")
|
Arguments
fasta |
A DNAStringSet |
mloc |
fasta The indicies that have motifs |
cloc |
fasta The indicies that have compliment motifs |
n1 |
The motif name, an Atomic Character of only IUPAC characters |
combine |
If two motifs are found on the same index Merged|First |
Value
Two columns , the first being the instance the second being the distance
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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