gcheatmap: Heatmap of genetic correlations

In alexploner/GeneCorrAtlas: Display the Atlas of Genetic Correlations (Bulik-Sullivan et al. 2015)

Description

Plot a heatmap of genetic correlations

Usage

gcheatmap(data = gcatlas, distfun = cor2dist, symm = TRUE,
  margins = c(9, 9), fix = TRUE, ...)

Arguments

data	An object of the same structure as gcatlas
distfun	The function to convert a correlation matrix to a distance matrix for generating the dendrograms
symm	Logical switch indicating a heatmap of a symmetric matrix; passed on to heatmap and probably best left unchanged
margins	Numerical vector of length two, indicating how much space is reserved for the row/column labels. This is the same argument as for heatmap, but with a different default so that the trait names are reasonably readable with normal device size
fix	Logical expression indicating whether correlations outside of [-1,1] should be set to the limits
...	Extra arguments passed on to heatmap

Value

Invisibly, the same as function heatmap. This function is generally invoked to generate a plot.

See Also

heatmap, cor2dist, gcatlas

Examples

## Default heatmap of the full atlas
gcheatmap()	

alexploner/GeneCorrAtlas documentation built on May 12, 2019, 2:32 a.m.