numGenesChanged: Given a limma-outputted topTable (TT) it returns the number...
In alexsanchezpla/geneLists: Extracts (sub)vectors or (sub)matrices from a limma "Top-table" applying user- defined filters
Description
Usage
Arguments
See Also
Examples
Description
Given a limma-outputted topTable (TT) it returns the number of up or down regulated genes that woud be returned if the cutoff was set at different values.
Usage
1
numGenesChanged(TT, cName = "comparison")
Arguments
TT
A top table object such as produced by the limma package or the UEB pipeline.
cName
Name to the comparison that produced the top Table. Defaults to "comparison".
See Also
limma
Examples
1
2
3
fileName<- system.file("extdata", "ExpressAndTop_AvsB.csv2", package = "geneLists")
AvsB <- read.table(fileName, head=TRUE, sep=";", dec=",", row.names=1)
genesChanged <- numGenesChanged (AvsB, "Group A vs group B")
alexsanchezpla/geneLists documentation built on May 12, 2019, 7:41 a.m.
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Description Usage Arguments See Also Examples
Description
Given a limma-outputted topTable (TT) it returns the number of up or down regulated genes that woud be returned if the cutoff was set at different values.
Usage
1 | numGenesChanged(TT, cName = "comparison")
|
Arguments
TT |
A top table object such as produced by the limma package or the UEB pipeline. |
cName |
Name to the comparison that produced the top Table. Defaults to "comparison". |
See Also
limma
Examples
1 2 3 | fileName<- system.file("extdata", "ExpressAndTop_AvsB.csv2", package = "geneLists")
AvsB <- read.table(fileName, head=TRUE, sep=";", dec=",", row.names=1)
genesChanged <- numGenesChanged (AvsB, "Group A vs group B")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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