crawl_gsms: Crawls SRX pages for each GSM to get metadata.
In alexvpickering/GEOfastq: Downloads ENA Fastqs With GEO Accessions
Description
Usage
Arguments
Value
Examples
Description
Goes to each GSM page to get SRX then to each SRX page to get some more
metadata.
Usage
1
crawl_gsms(gsm_names, max.workers = 50)
Arguments
gsm_names
Character vector of GSMs.
max.workers
Maximum number of parallel workers to split task betweem
Value
data.frame
Examples
1
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srp_meta <- crawl_gsms("GSM3031462")
# returns NULL because records on dbGAP for privacy reasons
srp_meta <- crawl_gsms("GSM2439650")
# example with empty values
srp_meta <- crawl_gsms('GSM4043025')
alexvpickering/GEOfastq documentation built on Oct. 11, 2021, 6:44 p.m.
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Description Usage Arguments Value Examples
Description
Goes to each GSM page to get SRX then to each SRX page to get some more metadata.
Usage
1 | crawl_gsms(gsm_names, max.workers = 50)
|
Arguments
gsm_names |
Character vector of GSMs. |
max.workers |
Maximum number of parallel workers to split task betweem |
Value
data.frame
Examples
1 2 3 4 5 6 7 | srp_meta <- crawl_gsms("GSM3031462")
# returns NULL because records on dbGAP for privacy reasons
srp_meta <- crawl_gsms("GSM2439650")
# example with empty values
srp_meta <- crawl_gsms('GSM4043025')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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