convert_xgmml: Convert cytoscape xgmml to data.frames
In alexvpickering/revigoR: Scrape revigo webapp and plot results
Description
Usage
Arguments
Value
Examples
View source: R/revigo_forcegraph.R
Description
Convert cytoscape xgmml to data.frames
Usage
1
convert_xgmml(xgmml_path)
Arguments
xgmml_path
path to .xgmml file
Value
list of data.frames with nodes and links for forcegraph
Examples
1
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4
5
data(go_up1)
data_dir <- tempdir()
scrape_revigo(data_dir, go_up1)
xgmml_path <- file.path(data_dir, 'cytoscape_map.xgmml')
data <- convert_xgmml(xgmml_path)
alexvpickering/revigoR documentation built on March 17, 2021, 8:09 p.m.
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Description Usage Arguments Value Examples
View source: R/revigo_forcegraph.R
Description
Convert cytoscape xgmml to data.frames
Usage
1 | convert_xgmml(xgmml_path)
|
Arguments
xgmml_path |
path to .xgmml file |
Value
list of data.frames with nodes and links for forcegraph
Examples
1 2 3 4 5 | data(go_up1)
data_dir <- tempdir()
scrape_revigo(data_dir, go_up1)
xgmml_path <- file.path(data_dir, 'cytoscape_map.xgmml')
data <- convert_xgmml(xgmml_path)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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