scrape_revigo: Submits GO result to revigo and downloads all scripts and...
In alexvpickering/revigoR: Scrape revigo webapp and plot results

Note: requires installation of python packages through setup_env

1	scrape_revigo(data_dir, go_res)

`data_dir`	Directory to store revigo scripts and output files
`go_res`	data.frame with row.names containing GO ids and first column p-values. Optional columns `SYMBOL` and `logFC` can contain lists of significant genes and their logFC values respectively (used for heatplots of GO terms). An optional `analysis` integer column can contain 0 and 1's to indicate analysis identity (used to compare two seperate GO analyses).

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data(go_up1)
data_dir <- tempdir()
scrape_revigo(data_dir, go_up1)

alexvpickering/revigoR documentation built on March 17, 2021, 8:09 p.m.

alexvpickering/revigoR index

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