alexwailan/rpinecone: Defines sub-lineages of a clonal expansion via an phylogenetic tree.

The package will take a rooted ACCTRANS tree file and will define sub-lineages in a root-to-tip manner using a SNP threshold and relatibility threhold.

Getting started

Package details

AuthorAlexander Wailan
MaintainerAlexander Wailan <[email protected]>
LicenseGPL-3 | file LICENSE
Version0.1.0
URL http://github.com/alexwailan/rpinecone
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("alexwailan/rpinecone")
alexwailan/rpinecone documentation built on Dec. 4, 2019, 1:14 p.m.