View source: R/majorlineage_function.R
Function to identify major lineages composed of identified lineages Singletons which may not have a lineage can also be inlcuded in major lineage
1 | majorlineage(slnum, tree, assign, rthreshold)
|
slnum |
Number of Sub-lineage identified. |
tree |
The rooted phylogenetic tree. |
assign |
Vector of lineage numbers corresponding to tips on a tree. |
rthreshold |
Number of internal nodes to the root each lineage must have intersecting to be declared as a major sub-lineage. |
ntips |
Number of tips on the phylogenetic tree. |
treeNnodes |
Number of internal nodes on phylogenetic tree. majorlineage() |
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