extract_signal: Extract raw signal from PamChip image
In amelbek/pamgeneAnalyzeR: Extract data from PamGene PamChip images
Description
Usage
Arguments
Value
Description
function to extract raw signal of each peptide, left and right controls and 8 background points.
Usage
1
extract_signal(centers.coords, img, radius = 5, parallel = FALSE)
Arguments
centers.coords
data frame of coordinates of centers obtained from the find_centers function.
img
Pamgene image.
radius
the number of pixels to take from the center to build the circle (default 5).
parallel
Parallelize to process to fasten the output.
Value
Returns a data frame with the basic statistics values of all pixels in the circle (mean, median, sum ad sd) of each peptides, left ans right controls and 8 background points.
amelbek/pamgeneAnalyzeR documentation built on May 29, 2019, 8:30 a.m.
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Description Usage Arguments Value
Description
function to extract raw signal of each peptide, left and right controls and 8 background points.
Usage
1 | extract_signal(centers.coords, img, radius = 5, parallel = FALSE)
|
Arguments
centers.coords |
data frame of coordinates of centers obtained from the |
img |
Pamgene image. |
radius |
the number of pixels to take from the center to build the circle (default 5). |
parallel |
Parallelize to process to fasten the output. |
Value
Returns a data frame with the basic statistics values of all pixels in the circle (mean, median, sum ad sd) of each peptides, left ans right controls and 8 background points.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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