plot_circles: Plot circles on PamChip image

In amelbek/pamgeneAnalyzeR: Extract data from PamGene PamChip images

Description

Plot the circles on the PamChip image of the areas from wich the signal will be taken with the extract_signal function. this function is used to optimize the radius to be used and check that the circles are inside the blobs.

Usage

plot_circles(centers.coords, img, radius = 5, parallel = TRUE)

Arguments

centers.coords	data frame of coordinates of centers obtained from the link{find_centers} function.
img	PamChip image.
radius	the number of pixels to take from the center to build the circle (default 5).
parallel	Logical. If TRUE parallelize to process to fasten the output (default TRUE).

Value

Returns the PamChip image with the circles of areas of each peptides, left ans right controls and 8 background points.

amelbek/pamgeneAnalyzeR documentation built on May 29, 2019, 8:30 a.m.