Man pages for amkusmec/FarmCPUpp
Perform GWAS Using the FarmCPU Model
| farmcpu | Perform GWAS using the FarmCPU model. |
| FarmCPUpp | A package for efficient GWAS using the FarmCPU model. |
| get_bins | Bin markers and select representative markers based on... |
| get_qtns | Select pseudo-QTNs. |
| manhattan_plot | Make a manhattan plot from GWAS results. |
| prior | Set marker p-values based on prior expectations. |
| qq_plot | Make a QQ plot from GWAS results. |
| quick_lm | Perform single marker regression tests. |
| QuickLM | Parallelized general linear model. |
| remove_qtns | Remove highly correlated pseudo-QTNs. |
| substitute_pvalue | Substitute p-values for pseudo-QTNs. |
| write_results | Write GWAS results to disk. |
