Description Usage Arguments Value Author(s)
Removes highly correlated pseudo-QTNs based on the Pearson correlation coefficients between marker scores. In each pair of highly correlated markers, the marker with the lower p-value is retained.
1 2 | remove_qtns(GDP = NULL, GM = NULL, seqQTN = NULL, seqQTN.p = NULL,
threshold = 0.99)
|
GDP |
A pointer to a big.matrix object containing the marker scores. |
GM |
A data frame with three columns: marker ID, chromosome, and base-pair position. |
seqQTN |
An integer vector of columns in GDP that have been selected as pseudo-QTNs. |
seqQTN.p |
A numeric vector of p-values for the pseudo-QTNs. |
threshold |
A numeric scalar. Pairs of pseudo-QTNs with correlation coefficients above this value will be pruned. |
An integer vector specifying the columns in GDP
that are
selected as pseudo-QTNs.
Zhiwu Zhang
Aaron Kusmec
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.