Description Usage Arguments Value Author(s)
Returns single marker regression test results for all markers in GDP
,
effect estimates for covariates (user-specified and pseudo-QTNs), and
p-values for pseudo-QTNs used by get_qtns
.
1 |
Y |
A numeric vector of phenotype values. May include missing values. |
GDP |
A pointer to a big.matrix object. |
CV |
A numeric matrix where each column contains values for a covariate. |
npc |
An integer scalar. Number of columns of |
seqQTN |
An integer vector denoting the column in |
A list containing the following components:
P
a numeric matrix whose first four columns contain the effect estimate, standard error, t statistic, and p-value for each single marker regression test. Subsequent columns contain p-values for pseudo-QTNs when used as a covariate when testing each marker.
P0
a numeric vector containing p-values for the mean, user-specified covariates, and pseudo-QTNs in the null model.
betapc
a numeric vector of effect estimates for user-specified covariates.
Aaron Kusmec
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