farmcpu | Perform GWAS using the FarmCPU model. |
FarmCPUpp | A package for efficient GWAS using the FarmCPU model. |
get_bins | Bin markers and select representative markers based on... |
get_qtns | Select pseudo-QTNs. |
manhattan_plot | Make a manhattan plot from GWAS results. |
prior | Set marker p-values based on prior expectations. |
qq_plot | Make a QQ plot from GWAS results. |
quick_lm | Perform single marker regression tests. |
QuickLM | Parallelized general linear model. |
remove_qtns | Remove highly correlated pseudo-QTNs. |
substitute_pvalue | Substitute p-values for pseudo-QTNs. |
write_results | Write GWAS results to disk. |
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