Perform GWAS Using the FarmCPU Model

bin_reml | Evaluate the maximum log-likelihood. |

farmcpu | Perform GWAS using the FarmCPU model. |

FarmCPUpp | A package for efficient GWAS using the FarmCPU model. |

get_bins | Bin markers and select representative markers based on... |

get_qtns | Select pseudo-QTNs. |

manhattan_plot | Make a manhattan plot from GWAS results. |

prior | Set marker p-values based on prior expectations. |

qq_plot | Make a QQ plot from GWAS results. |

quick_lm | Perform single marker regression tests. |

QuickLM | Parallelized general linear model. |

remove_qtns | Remove highly correlated pseudo-QTNs. |

substitute_pvalue | Substitute p-values for pseudo-QTNs. |

write_results | Write GWAS results to disk. |

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