Man pages for ammararuby/MButils
Utility functions for DNA metabarcoding
| assignment | Example ASV assignments from assignSpecies_mod |
| assignSpecies_mod | Return long-form species assignments with DADA2's... |
| asv_to_taxonomy | Join ASV assignments to taxonomy from a taxmap object |
| biplot | Flexibly generate a biplot from the output of a PCA |
| lca | Find the last common ancestor of assignSpecies taxonomic... |
| lookup_tax_data | Convert one or more data sets to taxmap |
| lowest_level | Extract the finest taxonomic level of ASVs from a phyloseq... |
| merge_into_phyloseq | Add New Sample Data into Phyloseq Object |
| parse_counts | Parse read count QC files generated at pipeline steps |
| percent_unassigned | Find the percentage of reads without a taxon assignment |
| seqtab | Example sequence table |
| taxonomy | Example taxonomy data structure |
| update_assignment | Update the taxonomic assignment of a phyloseq object |
