asv_to_taxonomy: Join ASV assignments to taxonomy from a taxmap object
In ammararuby/MButils: Utility functions for DNA metabarcoding
View source: R/asv_to_taxonomy.R
asv_to_taxonomy R Documentation
Join ASV assignments to taxonomy from a taxmap object
Description
The output of the assignSpecies_mod function is a
two-column dataframe of ASVs and their taxonomic assignments based on exact
matching to reference sequences. This joins the named taxonomic assignment
to a full taxonomy queried from NCBI.
Usage
asv_to_taxonomy(taxmap)
Arguments
taxmap
An R6Class object of class Taxmap produced by
the metacoder::lookup_tax_data function.
Value
A join of each ASV assignment to its full taxonomy, done from finer
taxonomic levels upward.
ammararuby/MButils documentation built on Jan. 29, 2023, 11:13 a.m.
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View source: R/asv_to_taxonomy.R
| asv_to_taxonomy | R Documentation |
Join ASV assignments to taxonomy from a taxmap object
Description
The output of the assignSpecies_mod function is a
two-column dataframe of ASVs and their taxonomic assignments based on exact
matching to reference sequences. This joins the named taxonomic assignment
to a full taxonomy queried from NCBI.
Usage
asv_to_taxonomy(taxmap)
Arguments
taxmap |
An |
Value
A join of each ASV assignment to its full taxonomy, done from finer taxonomic levels upward.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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