lowest_level: Extract the finest taxonomic level of ASVs from a phyloseq...
In ammararuby/MButils: Utility functions for DNA metabarcoding
lowest_level R Documentation
Extract the finest taxonomic level of ASVs from a phyloseq taxonomy
Description
Identifies the lowest taxonomic name available for each ASV in a
phyloseq taxonomy table and aggregates them in a new column.
Usage
lowest_level(taxtab)
Arguments
taxtab
The taxonomy table of the phyloseq object to be renamed
Value
An updated taxonomy table, with an added column, 'name', that
contains the name of the lowest phylogenetic level to which that ASV is
identified.
ammararuby/MButils documentation built on Jan. 29, 2023, 11:13 a.m.
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| lowest_level | R Documentation |
Extract the finest taxonomic level of ASVs from a phyloseq taxonomy
Description
Identifies the lowest taxonomic name available for each ASV in a phyloseq taxonomy table and aggregates them in a new column.
Usage
lowest_level(taxtab)
Arguments
taxtab |
The taxonomy table of the phyloseq object to be renamed |
Value
An updated taxonomy table, with an added column, 'name', that contains the name of the lowest phylogenetic level to which that ASV is identified.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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