LUAD_subset: Subset of batch-corrected multi-omic TCGA data in lung...
In andreamrau/padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis
LUAD_subset R Documentation
Subset of batch-corrected multi-omic TCGA data in lung adenocarcinoma
Description
List of multi-omic (RNA-seq, copy number alterations, methylation, and
miRNA-seq) and phenotypic data in 144 individuals in the TCGA-LUAD
data for the 13 genes in the D4-GDI signaling pathway.
Usage
data(LUAD_subset)
Format
A named list of five objects of class data.frame
containing a subset of the batch-corrected multi-omic TCGA
data from lung adenocarcinoma, corresponding to the 13 genes
in the D4 GDI signaling pathway:
'clinical' is of dimension 144 x 55 and contains clinical
variables for the 144 individuals. 'rnaseq', 'methyl',
'cna', and 'mirna' are of dimension 13 (genes) or 1 (miRNAs)
x 144 (samples), where the row names contain the gene symbol or miRNA name.
Source
References
The Cancer Genome Atlas Research Network (2014) Nature 511, 543-550.
https://doi.org/10.1038/nature13385.
Rau et al. (2019) bioRxiv, https://doi.org/10.1101/827022.
Examples
data(LUAD_subset)
head(LUAD_subset)
andreamrau/padma documentation built on June 15, 2024, 8:39 a.m.
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| LUAD_subset | R Documentation |
Subset of batch-corrected multi-omic TCGA data in lung adenocarcinoma
Description
List of multi-omic (RNA-seq, copy number alterations, methylation, and miRNA-seq) and phenotypic data in 144 individuals in the TCGA-LUAD data for the 13 genes in the D4-GDI signaling pathway.
Usage
data(LUAD_subset)
Format
A named list of five objects of class data.frame
containing a subset of the batch-corrected multi-omic TCGA
data from lung adenocarcinoma, corresponding to the 13 genes
in the D4 GDI signaling pathway:
'clinical' is of dimension 144 x 55 and contains clinical
variables for the 144 individuals. 'rnaseq', 'methyl',
'cna', and 'mirna' are of dimension 13 (genes) or 1 (miRNAs)
x 144 (samples), where the row names contain the gene symbol or miRNA name.
Source
References
The Cancer Genome Atlas Research Network (2014) Nature 511, 543-550. https://doi.org/10.1038/nature13385.
Rau et al. (2019) bioRxiv, https://doi.org/10.1101/827022.
Examples
data(LUAD_subset)
head(LUAD_subset)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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