andreamrau/padma: Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis
Use multiple factor analysis to calculate individualized pathway-centric scores of deviation with respect to the sampled population based on multi-omic assays (e.g., RNA-seq, copy number alterations, methylation, etc). Graphical and numerical outputs are provided to identify highly aberrant individuals for a particular pathway of interest, as well as the gene and omics drivers of aberrant multi-omic profiles.
Getting started
Browse package contents
Package details |
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| Bioconductor views | BioCarta GeneExpression MethylSeq Pathways PrincipalComponent RNASeq Software StatisticalMethod |
| Maintainer | |
| License | GPL (>=3) |
| Version | 1.7.1 |
| URL | https://github.com/andreamrau/padma |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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