Files in andreaskapou/mpgex
Methylation Profiles predict Gene Expression
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/basis_functions.R
R/blm.R
R/bpr.R
R/bpr_EM.R
R/bpr_fdmm.R
R/bpr_gibbs.R
R/bpr_optimize.R
R/data.R
R/design_matrix.R
R/evaluate_functions.R
R/learn_diff_meth.R
R/mpgex_cluster.R
R/mpgex_cluster_bayes.R
R/mpgex_diff_regr.R
R/mpgex_differential_regr.R
R/mpgex_package.R
R/mpgex_regr.R
R/mpgex_regr_bayes.R
R/plots.R
R/predict_model_gex.R
R/train_model_gex.R
R/utils.R
README.md
data-raw/create_data.R
data-raw/create_diff_bpr_data.R
data/bpr_control_data.rda
data/bpr_data.rda
data/bpr_treatment_data.rda
data/gex_control_data.rda
data/gex_data.rda
data/gex_treatment_data.rda
man/blm.Rd
man/bpr_EM.Rd
man/bpr_control_data.Rd
man/bpr_data.Rd
man/bpr_fdmm.Rd
man/bpr_gibbs.Rd
man/bpr_gibbs.list.Rd
man/bpr_gibbs.matrix.Rd
man/bpr_gradient.Rd
man/bpr_likelihood.Rd
man/bpr_optim.Rd
man/bpr_optim.list.Rd
man/bpr_optim.matrix.Rd
man/bpr_treatment_data.Rd
man/calculate_errors.Rd
man/design_matrix.Rd
man/design_matrix.polynomial.Rd
man/design_matrix.rbf.Rd
man/eval_function.Rd
man/eval_function.polynomial.Rd
man/eval_function.rbf.Rd
man/eval_probit_function.Rd
man/gex_control_data.Rd
man/gex_data.Rd
man/gex_treatment_data.Rd
man/learn_diff_meth.Rd
man/log_sum_exp.Rd
man/minmax_scaling.Rd
man/mpgex.Rd
man/mpgex_cluster.Rd
man/mpgex_cluster_bayes.Rd
man/mpgex_diff_regr.Rd
man/mpgex_differential_regr.Rd
man/mpgex_regr.Rd
man/mpgex_regr_bayes.Rd
man/partition_data.Rd
man/plot.mpgex_diff_regr.Rd
man/plot.polynomial.Rd
man/plot.rbf.Rd
man/plot_diff_mpgex.Rd
man/plot_fitted_profiles.Rd
man/polynomial.object.Rd
man/polynomial_basis.Rd
man/predict.blm.Rd
man/predict_model_gex.Rd
man/print.blm.Rd
man/print.summary.blm.Rd
man/rbf.object.Rd
man/rbf_basis.Rd
man/sum_weighted_bpr_grad.Rd
man/sum_weighted_bpr_lik.Rd
man/summary.blm.Rd
man/train_model_gex.Rd
mpgex.Rproj
tests/testthat.R
tests/testthat/test-basis.R
tests/testthat/test-bpr.R
tests/testthat/test-design_matrix.R
tests/testthat/test-eval_function.R
tests/testthat/test-utils.R
