Description Usage Arguments Value
learn_diff_meth
learns differential methylation profiles and returns
the fitted coefficients using the Basis Linear Model.
1 2 3 | learn_diff_meth(control, treatment, diff_basis, fit_feature = NULL,
lambda = 0, x_eval = 50, is_parallel = is_parallel,
no_cores = no_cores)
|
control |
The optimized values for the control samples. |
treatment |
The optimized values for the treatment samples. |
diff_basis |
The basis object for differential methylation. |
fit_feature |
Additional feature on how well the profile fits the methylation data. |
lambda |
The regularization parameter when fitting the BLM. |
x_eval |
Integer denoting the number of evaluation points. |
is_parallel |
Logical, indicating if code should be run in parallel. |
no_cores |
Number of cores to be used, default is max_no_cores - 1. |
The differential methylation profiles and the corresponding fitted coefficients from the BLM model.
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