API for andrewrech/antigen.garnish
Ensemble Neoepitope Prediction from DNA Variants in R

Global functions
antigen.garnish Man page
antigen.garnish-package Man page
check_dep_versions Man page Source code
check_pred_tools Man page Source code
collate_netMHC Man page Source code
detect_mhc Man page Source code
extract_cDNA Man page Source code
garnish_affinity Man page Source code
garnish_antigens Man page Source code
garnish_clonality Man page Source code
garnish_fitness Man page Source code
garnish_jaffa Man page Source code
garnish_plot Man page Source code
garnish_slim Man page Source code
garnish_summary Man page Source code
garnish_variants Man page Source code
get_metadata Man page Source code
get_pred_commands Man page Source code
get_ss_str Man page Source code
get_vcf_info_dt Man page Source code
get_vcf_sample_dt Man page Source code
get_vcf_snpeff_dt Man page Source code
list_mhc Man page Source code
make_BLAST_uuid Man page Source code
make_DAI_uuid Man page Source code
make_cDNA Man page Source code
make_nmers Man page Source code
merge_predictions Man page Source code
run_mhcflurry Man page Source code
run_mhcnuggets Man page Source code
run_netMHC Man page Source code
translate_cDNA Man page Source code
write_mhcnuggets_nmers Man page Source code
write_netmhc_nmers Man page Source code
andrewrech/antigen.garnish documentation built on Aug. 3, 2018, 7:27 p.m.