R/antigen.garnish_pkg.R

In andrewrech/antigen.garnish: Tumor neoantigen prediction

#' \pkg{antigen.garnish}: tumor neoantigen prediction
#'
#' [Github](https://github.com/immune-health/antigen.garnish)
#' [Documentation](https://neoantigens.rech.io/)
#'
#' @seealso \code{\link{garnish_variants}}
#' @seealso \code{\link{garnish_affinity}}
#' @seealso \code{\link{garnish_antigens}}
#' @docType package
#' @name antigen.garnish
#' @import data.table
#' @import mclust
#' @import parallel
#' @import stringr
#' @importFrom testthat expect_equal expect_equivalent expect_gt expect_true skip succeed test_that
#' @importFrom Biostrings AAStringSet AMINO_ACID_CODE writeXStringSet DNAString translate pairwiseAlignment
#' @importFrom Rdpack reprompt
#' @importFrom magrittr %>% %T>% %$% %<>%
#' @importFrom purrr partial
#' @importFrom stats na.omit t.test ecdf quantile
#' @importFrom tidyr separate_rows
#' @importFrom uuid UUIDgenerate
#' @importFrom vcfR read.vcfR
#' @importFrom zoo rollapply
#'
#' @md
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