options: Set and get global options for INLA

In andrewzm/INLA: Functions which allow to perform full Bayesian analysis of latent Gaussian models using Integrated Nested Laplace Approximaxion

Description

Set and get global options for INLA

Usage

 inla.setOption(...)
 inla.getOption(option)
 

Arguments

...

Option and value, like option=value or option, value; see the Examples

option

The option to get. If option = NULL then inla.getOption then inla.getOption will display the current defaults, otherwise, option must be one of inla.call: The path to the inla-program. inla.arg: Additional arguments to inla.call fmesher.call: The path to the fmesher-program fmesher.arg: Additional arguments to fmesher.call num.threads: Number of threads to use. keep: Keep temporary files? working.directory: The name of the working directory. silent: Run the inla-program in a silent mode? debug : Run the inla-program in a debug mode? internal.binary.mode : if FALSE the (some) output are in ascii format instead of binary format. Using this option, then inla.collect.results will fail (Expert mode) internal.experimental.mode : Expert option cygwin : The home of the Cygwin installation (default "C:/cygwin") [Remote computing for Windows only] ssh.auth.sock: The ssh bind-adress (value of $SSH_AUTH_SOCK int the Cygwin-shell). [Remote computing for Windows only] enable.inla.argument.weights : if TRUE the inla accepts argument weights show.warning.graph.file : Give a warning for using the obsolete argument graph.file instead of graph scale.model.default : The default value of argument scale.model which optionally scale intrinisic models to have generalized unit average variance The options are stored in the variable inla.options in the .GlobalEnv-environment.

Author(s)

Havard Rue [e-mail]

Examples

 ## set number of threads
 inla.setOption("num.threads", 2)
 ## alternative format
 inla.setOption(num.threads=2)
 ## check it
 inla.getOption("num.threads")

andrewzm/INLA documentation built on May 10, 2019, 11:12 a.m.