Files in andreyshabalin/ramwas
Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/bam_qc_calc.r
R/bam_qc_plot.r
R/getByLocation.r
R/param.r
R/plotting.r
R/ramwas.r
R/rowcolSumSq.r
R/rw0simdata.r
R/rw1scanBam.r
R/rw2collectqc.r
R/rw3covMatrix.r
R/rw4pca.r
R/rw5mwas.r
R/rw6anno.r
R/rw7mmcv.r
R/rwCellTypeEst.r
R/rwCpGset.r
R/rwDataClass.r
R/rwDataSubset.r
R/rwSNPS.r
README.md
inst/CITATION
inst/extdata/bigQC.rds
inst/extdata/cpgset.rds
inst/extdata/param_file.txt
inst/extdata/qc_sample.rds
inst/extdata/small.bam
man/MakeBED.Rd
man/QCs.Rd
man/RaMWAS.Rd
man/cachedRDSload.Rd
man/figures/hint.png
man/findBestNpvs.Rd
man/get.Rd
man/getCpGset.Rd
man/injectSNPsMAF.Rd
man/insilicoFASTQ.Rd
man/isAbsolutePath.Rd
man/makefullpath.Rd
man/manhattan.Rd
man/mat2cols.Rd
man/orthonormalizeCovariates.Rd
man/parameterDump.Rd
man/parameterPreprocess.Rd
man/parametersFromFile.Rd
man/pipeline.Rd
man/plotCV.Rd
man/plotFragmentSizeDistributionEstimate.Rd
man/plotPC.Rd
man/processCommandLine.Rd
man/pvalue2qvalue.Rd
man/qqplotFast.Rd
man/ramwas0createArtificialData.Rd
man/ramwasAnnotateLocations.Rd
man/ramwasParameters.Rd
man/rowcolSumSq.Rd
man/rwDataClass-class.Rd
man/subsetData.Rd
man/testPhenotype.Rd
ramwas.Rproj
src/rw_c_code.c
vignettes/Flow.png
vignettes/PCval.png
vignettes/PCvec.png
vignettes/QQfull.png
vignettes/QQnull.png
vignettes/RW1_intro.Rmd
vignettes/RW2_CpG_sets.Rmd
vignettes/RW3_BAM_QCs.Rmd
vignettes/RW4_SNPs.Rmd
vignettes/RW5a_matrix.Rmd
vignettes/RW5c_matrix.Rmd
vignettes/RW6_param.Rmd
vignettes/bib.bib
