pvalue2qvalue: Calculate Benjamini-Hochberg q-values
In andreyshabalin/ramwas: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Description
Usage
Arguments
Details
Value
Note
Author(s)
Examples
Description
Calculate Benjamini-Hochberg q-values for a vector of p-values.
Usage
1
pvalue2qvalue(pv, n = length(pv))
Arguments
pv
Vector of p-values.
n
If pv has only top p-values from a bigger set,
n should indicate the number of tests performed.
Details
The q-values can be slightly conservative compared to
other popular q-value calculation methods.
Value
Return a vector of q-values matching p-values in pv.
Note
The function runs faster if the vector pv is sorted.
Author(s)
Andrey A Shabalin andrey.shabalin@gmail.com
Examples
1
2
3
pv = runif(20)^2
qv = pvalue2qvalue(pv)
andreyshabalin/ramwas documentation built on Sept. 27, 2021, 7:25 p.m.
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Description Usage Arguments Details Value Note Author(s) Examples
Description
Calculate Benjamini-Hochberg q-values for a vector of p-values.
Usage
1 | pvalue2qvalue(pv, n = length(pv))
|
Arguments
pv |
Vector of p-values. |
n |
If |
Details
The q-values can be slightly conservative compared to other popular q-value calculation methods.
Value
Return a vector of q-values matching p-values in pv.
Note
The function runs faster if the vector pv is sorted.
Author(s)
Andrey A Shabalin andrey.shabalin@gmail.com
Examples
1 2 3 | pv = runif(20)^2
qv = pvalue2qvalue(pv)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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