Description Usage Arguments Details Value
For Dr.Warehouse and i2b2
1 2 3 |
num |
the identifier of the cohort/num_temp |
num_type |
type of num: one of c('num_temp', 'cohorte') |
data_type |
type of data: one of c('bio_num', 'cim10'). 'bio_num' for biological test results with numeric value. 'cim10' for ICD10 codes |
ICD_prefix |
For i2b2. prefix of the CONCEPT_CDs for ICD codes (used to filter the CONCEPT_CDs) (default = 'CIM10') |
BIO_prefix |
For i2b2. prefix of the CONCEPT_CDs for labtest codes (used to filter the CONCEPT_CDs) (default = 'LOINC') |
use_scheme_key |
For i2b2. set to 'TRUE' if you want to use a SCHEME_KEY column in OBSERVATION_FACT to filter the FACTS. if 'TRUE', the value of ICD_prefix or BIO_prefix are used to filter the FACTS. |
config |
a config environment created by the function getConfig. |
config |
a config environment created by the function getConfig. |
Get the data (e.g. ICD codes or laboratory test results) for the patients in a cohort/num_temp.
a data.frame
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