Description Usage Arguments Value Author(s) See Also Examples
This function calculates the estimated maximum number of samples a user can multiplex in one Illumina lane given the number of cutsites, while maintaining a desired user-defined coverage.
1 2 3 | Samples_Per_Lane(num_cutsites,
desired_coverage = NULL,
sequencing_machine = NULL)
|
num_cutsites |
Number of cutsites present in the genome. This number can be the output from |
desired_coverage |
Number of the coverage the user wishes to keep. If no value is provided, the default value is |
sequencing_machine |
Illumina sequencing platform that the user wants to use for sequencing. Argument has two parameters, |
Returns a vector with an estimate of low, medium, and high estimates of the number of samples a user can fit in a single Illumina lane.
Kira Long
1 2 3 4 5 6 7 8 | #Define parameters
numberCuts <- 39000
coverage <- 30
#Run arguments in Function
Samples_Per_Lane(numberCuts,
coverage,
"hiseq4000")
|
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