renz: Restriction enzymes and corresponding cutsite sequences

In angelgr2/radseq_tools: Tools for the Exploratory Analysis of RADseq Data

Description

A vector of commonly used restriction enzymes and their corresponding cutsite sequences. These cutsite sequences can be used in find_cuts to find the cutsites in a provided genome. This dataset can be used to explore the varying number of cutsites and cutsite density of various restriction enzymes on a genome. Selecting the correct enzyme for a RADseq study is important for the study's success.

Usage

data("renz")

Format

A vector containing 4 restriction enzymes and a corresponding cutesite sequence.

pstI

"CTGCAG"

sbfI

"CCTGCAGG"

ecoRI

"GAATTC"

hindIII

"AAGCTT"

Examples

data(renz)

#Select EcoRI enzyme

ecoRI <- renz["ecoRI"]

angelgr2/radseq_tools documentation built on May 15, 2019, 3:59 a.m.