Description Usage Arguments Value Author(s) Examples
Function to read and process FASTA files into single-line sequences, R compatible objects.
1 | process_fasta(path_to_fasta, min_seq_len)
|
path_to_fasta |
Path to a gzipped FASTA file. |
min_seq_len |
( |
Returns vector containing per-Chromosome/Scaffold sequences.
Example: "ACGTACGT...", "ACGTACGT...", "ACGTACGT...", ...
Angel G. Rivera-Colon
1 2 3 4 5 6 7 | # Path to FASTA file
myfasta <- system.file("extdata",
"test_geno.fa.gz",
package = "RADseqTools")
# Create a sequences object
mySeqs <- process_fasta(myfasta, 10000)
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