process_fasta: Read and Process FASTA Files.
In angelgr2/radseq_tools: Tools for the Exploratory Analysis of RADseq Data

Description Usage Arguments Value Author(s) Examples

Function to read and process FASTA files into single-line sequences, R compatible objects.

1	process_fasta(path_to_fasta, min_seq_len)

`path_to_fasta`	Path to a gzipped FASTA file.
`min_seq_len`	(`int`) Minimum sequence length. Sequences smaller than this value will not be included in the `sequences` object. Default: (`5000`).

Returns vector containing per-Chromosome/Scaffold sequences.

Example: "ACGTACGT...", "ACGTACGT...", "ACGTACGT...", ...

Angel G. Rivera-Colon

# Path to FASTA file
myfasta <- system.file("extdata",
                       "test_geno.fa.gz",
                       package = "RADseqTools")

# Create a sequences object
mySeqs <- process_fasta(myfasta, 10000)