compute_anova_dose_time: This function computes a two way anova between dose and time...

In angy89/TinderMIX: TinderMIX: An R package to cluster gene expression by contour plots

Description

This function computes a two way anova between dose and time for the expression value of every genes

Usage

compute_anova_dose_time(exp_data, pheno_data, dose_index, time_point_index,
  adj.method = "none")

Arguments

exp_data	is the expression matrix with genes on the rows and samples on the columns
pheno_data	is a dataframe with phenodata informations. Samples are on the rows. The columns should include the dose and time point information.
dose_index	numeric value specifing the column of the phenodata table containing the doses
time_point_index	numeric value specifing the column of the phenodata table containing the time points
adj.method	a string specifying the adjustement method for the pvalue

Value

a matrix with pvalue associated to the dose, timepoint and the dose*timepoint effect

angy89/TinderMIX documentation built on Nov. 26, 2020, 9:26 p.m.