compute_fc: This function starts from a phenodata and gene expression...

In angy89/TinderMIX: TinderMIX: An R package to cluster gene expression by contour plots

Description

This function starts from a phenodata and gene expression data matrix and compute all the possible pairwise foldchange values

Usage

compute_fc(exp_data, pheno_data, dose_index, time_index)

Arguments

exp_data	is the expression matrix with genes on the rows and samples on the columns
pheno_data	is a dataframe with phenodata informations. Samples are on the rows. The columns should include the dose and time point information. Doses of controls need to be indicated as 0
dose_index	index of the column containiing the dose
time_index	index of the column containing the time

Value

a list containing two new matrices

fc_data	a matrix with all the possible fold_changes
pdata	the new phenodata table

angy89/TinderMIX documentation built on Nov. 26, 2020, 9:26 p.m.