API for anilchalisey/chompR
ChIP and ATAC-seq data processing pipeline
| Global functions | |
|---|---|
| %>% | Man page |
| Granges2df | Man page |
| Granges2saf | Man page |
| align_dna | Man page |
| annotate_peaks | Man page |
| build_index | Man page |
| cc_chip | Man page |
| chain | Man page |
| check_sample | Man page |
| consensus_peaks | Man page |
| create_bw | Man page |
| deseq2_analysis | Man page |
| exploratory_analysis | Man page |
| fl_atac | Man page |
| make_MA | Man page |
| make_PCA | Man page |
| make_scree | Man page |
| peak2Granges | Man page |
| plot_peaksummary | Man page |
| qc_alignment | Man page |
| qc_alignment2 | Man page |
| run_atac | Man page |
| run_chip | Man page |
| run_fastqc | Man page |
| run_featurecounts | Man page |
| run_great | Man page |
| run_hisat2 | Man page |
| run_macs2 | Man page |
| run_multiqc | Man page |
| run_sambambadup | Man page |
| run_samflagstat | Man page |
| run_samindex | Man page |
| run_samsort | Man page |
| run_samview | Man page |
| sanity_check | Man page |
| shift_bam | Man page |
| trim_fastq | Man page |
